I think this is likely due to having an old version of your ~/.ceramic/daemon.config.json file. Nodes now expect an indexing section with a models field. Can you try deleting it so that the node will re-generate it the next time it runs?
We will also be putting out a new version next week which will make sure the node is still backwards compatible and can operate on the old versions of the config file, so you could also wait for that if that’s easier.